Sunday
2:00 pm - 8:00 pm
Arrival and Check-in
6:00 pm - 7:00 pm
Dinner
7:30 pm - 7:40 pm
Introductory Comments by GRC Site Staff / Welcome from the GRC Chair
7:40 pm - 9:30 pm
Emerging Technologies
Discussion Leader: Maria-Elena Torres-Padilla (Institute of Epigenetics and Stem Cells, Helmholtz Zentrum München, Germany)
7:40 pm - 8:00 pm
Hiroshi Kimura (Tokyo Institute of Technology, Japan)
"Chromatin Modification Dynamics During the Activation and Inactivation of Transcription"
8:00 pm - 8:10 pm
Discussion
8:10 pm - 8:30 pm
Ana Pombo (Berlin Institute for Medical Systems Biology, Max Delbrück Center for Molecular Medicine, Germany)
"Genome Architecture Mapping: Discovering 3D Chromatin Contacts in Rare Cell Types"
8:30 pm - 8:40 pm
Discussion
8:40 pm - 8:50 pm
Meizhen Zheng (The Jackson Laboratory for Genomic Medicine, USA)
"Multiplex Chromatin Interactions with Single Molecule Precision"
8:50 pm - 8:55 pm
Discussion
8:55 pm - 9:05 pm
Mary Arrastia (California Institute of Technology, USA)
"Development of Single-Cell SPRITE to Comprehensively Map Dynamic Organization of DNA in Higher-Order Nuclear Structures Within Single Cells"
9:05 pm - 9:10 pm
Discussion
9:10 pm - 9:20 pm
Haifeng Wang (Stanford University, USA)
"CRISPR-Mediated Programmable 3D Genome Positioning and Nuclear Organization"
9:20 pm - 9:30 pm
Discussion
Monday
7:30 am - 8:30 am
Breakfast
9:00 am - 12:30 pm
New Concepts of Mechanisms for Chromatin Interactions
Discussion Leader: Andrew Belmont (University of Illinois at Urbana-Champaign, USA)
9:00 am - 9:20 am
Frank Alber (University of California, Los Angeles, USA)
"Mapping the Spatial Organization of Genomes Through Data Integration"
9:20 am - 9:30 am
Discussion
9:30 am - 9:50 am
Jian Ma (Carnegie Mellon University, USA)
"Integrative Analysis of Nuclear Genome Compartmentalization"
9:50 am - 10:00 am
Discussion
10:00 am - 10:30 am
Group Photo / Coffee Break
10:30 am - 10:40 am
Jordan Rowley (University of Nebraska Medical Center, USA)
"SIP Identifies a Network of Condensin I-DCC Loops"
10:40 am - 10:45 am
Discussion
10:45 am - 10:55 am
Annaël Brunet (University of Oslo, Norway)
"Variable Nuclear Lamin B1 Interactions with Chromatin During the Circadian Cycle Are Uncoupled from Periodic Gene Expression"
10:55 am - 11:00 am
Discussion
11:00 am - 11:10 am
Qiang Wu (Shanghai Jiao Tong University, China)
"Tandem Directional CTCF Sites Balance Protocadherin Promoter Usage"
11:10 am - 11:15 am
Discussion
11:15 am - 11:35 am
Ibrahim Cisse (Massachusetts Institute of Technology, USA)
"Super-Resolution Imaging of Transcription in Live Mammalian Cells"
11:35 am - 11:45 am
Discussion
11:45 am - 11:55 am
Kyle Eagen (Northwestern University, USA)
"Local Chromatin Composition Impacts Chromosome Folding Between Distant Genomic Loci"
11:55 am - 12:00 pm
Discussion
12:00 pm - 12:20 pm
Naama Hirsch (Ben-Gurion University of the Negev, Israel)
"Deletion of Hdac9 Protein Coding Exons Alters the Transcription Regulation of Twist1 and Results in Limb and Craniofacial Phenotypes"
12:20 pm - 12:30 pm
Discussion
12:30 pm - 1:30 pm
Lunch
1:30 pm - 4:00 pm
Free Time
3:00 pm - 4:00 pm
The GRC Power Hourâ„¢
The GRC Power Hourâ„¢ is designed to address challenges women face in science and issues of diversity and inclusion. The program supports the professional growth of all members of our communities by providing an open forum for discussion and mentoring.
Organizer: Karen Reddy (Johns Hopkins University School of Medicine, USA)
4:00 pm - 6:00 pm
Poster Session
6:00 pm - 7:00 pm
Dinner
7:30 pm - 9:30 pm
Genome Maintenance and Stability
Discussion Leader: Danny Leung (Hong Kong University of Science and Technology, Hong Kong SAR China)
7:30 pm - 7:50 pm
Bas Van Steensel (Netherlands Cancer Institute, The Netherlands)
"Multiplexed Probing of the Impact of Chromatin Context on DNA Double-Strand Break Repair"
7:50 pm - 8:00 pm
Discussion
8:00 pm - 8:20 pm
Mathew Thayer (Oregon Health & Science University, USA)
"Control of Human Chromosome Dynamics by ASAR lncRNA Genes"
8:20 pm - 8:30 pm
Discussion
8:30 pm - 8:50 pm
Brian Chadwick (Florida State University, USA)
"Investigating Factors Involved in Maintaining the 3D Organization of the Human Inactive X Chromosome"
8:50 pm - 9:00 pm
Discussion
9:00 pm - 9:20 pm
Feng Yue (Northwestern University, USA)
"3D Genome Organization in Cancer"
9:20 pm - 9:30 pm
Discussion
Tuesday
7:30 am - 8:30 am
Breakfast
9:00 am - 12:30 pm
Chromatin Topology and Diseases
Discussion Leader: Feng Yue (Northwestern University, USA)
9:00 am - 9:20 am
Goncalo Castelo-Branco (Karolinska Institutet, Sweden)
"Epigenetic and Transcriptional States of Oligodendrocyte Lineage Cells During Development and in Multiple Sclerosis"
9:20 am - 9:30 am
Discussion
9:30 am - 9:50 am
Melissa Fullwood (Nanyang Technological University, Singapore)
"Investigating H3K27me3-Associated Chromatin Interactions in Cancer"
9:50 am - 10:00 am
Discussion
10:00 am - 10:20 am
Yin Shen (University of California, San Francisco, USA)
"Charting the 3D Epigenomes During Human Corticogenesis"
10:20 am - 10:30 am
Discussion
10:30 am - 11:00 am
Coffee Break
11:00 am - 11:10 am
M. Albert Basson (King's College London, United Kingdom)
"3D Mapping of Chromatin Organisation in Primary Neuron Progenitors Reveals Cis-Regulatory Functions of the Chromatin Remodeler CHD7"
11:10 am - 11:15 am
Discussion
11:15 am - 11:35 am
Yarui Diao (Duke University, USA)
"Long Range Promoter Regulation Revealed by CRISPR/Cas9 Genetic Screen and Capture Hi-C"
11:35 am - 11:45 am
Discussion
11:45 am - 12:05 pm
Yuk-Lap Yip (The Chinese University of Hong Kong, Hong Kong SAR China)
"Relating Genome Architecture and Transcriptional Regulation by Computational Modeling"
12:05 pm - 12:15 pm
Discussion
12:15 pm - 12:30 pm
General Discussion
12:30 pm - 1:30 pm
Lunch
2:00 pm - 4:00 pm
Poster Session
4:00 pm - 6:00 pm
Dynamics of Chromatin Architecture
Discussion Leader: Jane Skok (New York University, USA)
4:00 pm - 4:20 pm
Erez Aiden (Baylor College of Medicine, USA)
"Loops in Spacetime"
4:20 pm - 4:30 pm
Discussion
4:30 pm - 4:50 pm
Jan-Michael Peters (Research Institute of Molecular Pathology (IMP), Austria)
"How Cohesin and CTCF Mediate Genome Architecture"
4:50 pm - 5:00 pm
Discussion
5:00 pm - 5:20 pm
Karen Reddy (Johns Hopkins University School of Medicine, USA)
"Dynamic Organization of Lamina Associated Domains Through the Cell Cycle"
5:20 pm - 5:30 pm
Discussion
5:30 pm - 5:50 pm
Peter Fraser (Florida State University, USA)
"Chromosome and Genome Dynamics in Pre-Implantation Development"
5:50 pm - 6:00 pm
Discussion
6:00 pm - 7:00 pm
Dinner
Wednesday
7:30 am - 8:30 am
Breakfast
9:00 am - 12:30 pm
Chromatin Topology and Transcription
Discussion Leader: Ibrahim Cisse (Massachusetts Institute of Technology, USA)
9:00 am - 9:20 am
Jane Skok (New York University, USA)
"CTCFL and Its Impact on Gene Regulation and Interplay with CTCF Function"
9:20 am - 9:30 am
Discussion
9:30 am - 9:50 am
Cornelis Murre (University of California, San Diego, USA)
"Non-Coding Transcription Instructs Chromatin Folding and Compartmentalization to Dictate Enhancer-Promoter Communication"
9:50 am - 10:00 am
Discussion
10:00 am - 10:20 am
Irina Solovei (Ludwig Maximilian University of Munich, Germany)
"Spatial Organization of Transcription"
10:20 am - 10:30 am
Discussion
10:30 am - 11:00 am
Coffee Break
11:00 am - 11:20 am
Rafael Casellas (National Institute of Arthritis and Musculoskeletal and Skin Diseases, NIH, USA)
"The Role of Mediator and Pol II in Nuclear Architecture"
11:20 am - 11:30 am
Discussion
11:30 am - 11:50 am
Wange Lu (Nankai University, China)
"Regulation of Transcription Through Extremely Long Range Chromatin Interaction in Stem Cells and Cancer"
11:50 am - 12:00 pm
Discussion
12:00 pm - 12:10 pm
Mariano Gabitto (Simons Foundation, USA)
"Characterizing Chromatin Landscape from Aggregate and Single-Cell Genomic Assays Using Flexible Duration Modeling"
12:10 pm - 12:15 pm
Discussion
12:15 pm - 12:25 pm
Clara Novo (Babraham Institute, United Kingdom)
"Satellite Repeat Transcripts Regulate Heterochromatin Organization and Safeguard Chromosome Stability in Mouse Embryonic Stem Cells"
12:25 pm - 12:30 pm
Discussion
12:30 pm - 1:30 pm
Lunch
1:30 pm - 4:00 pm
Free Time
4:00 pm - 6:00 pm
Poster Session
6:00 pm - 7:00 pm
Dinner
7:30 pm - 9:30 pm
Epigenetic Inheritance
Discussion Leader: Melissa Fullwood (Nanyang Technological University, Singapore)
7:30 pm - 7:40 pm
Lily Deng (University of Washington, USA)
"Mapping the 3D Genome Organization in Single Cell with the Highly Multiplexing SABER Technology"
7:40 pm - 7:45 pm
Discussion
7:45 pm - 7:55 pm
Pavel Hozak (Institute of Molecular Genetics of the ASCR, v.v.i., Czech Republic)
"Inositol Phosphates Functions in Regulation of Gene Transcription"
7:55 pm - 8:00 pm
Discussion
8:00 pm - 8:20 pm
Anne Ferguson-Smith (University of Cambridge, United Kingdom)
"Long Range Cis-Acting Functional Interactions: Lessons from Genomic Imprinting"
8:20 pm - 8:30 pm
Discussion
8:30 pm - 8:40 pm
Nathan Harmston (Yale-NUS College, Singapore)
"TADs Are Ancient Features that Coincide with Metazoan Clusters of Noncoding Conservation"
8:40 pm - 8:45 pm
Discussion
8:45 pm - 8:55 pm
Pau Pascual-Garcia (University of Pennsylvania, USA)
"Nup98-Dependent Transcriptional Memory Is Established Independently of Transcription"
8:55 pm - 9:00 pm
Discussion
9:00 pm - 9:10 pm
Loretta Magagula (University of Cape Town, South Africa)
"Intra-TAD CTCF Occupancy and Antisense Long Noncoding RNAs in Colorectal Cancer"
9:10 pm - 9:15 pm
Discussion
9:15 pm - 9:25 pm
Ezequiel Miron (Netherlands Cancer Institute, The Netherlands)
"Chromatin Arranges in Filaments of Blobs with a Nanoscale Functional Zonation Which Becomes Accentuated in Replicative Senescence"
9:25 pm - 9:30 pm
Discussion
Thursday
7:30 am - 8:30 am
Breakfast
8:30 am - 9:00 am
Business Meeting
Nominations for the Next Vice Chair; Fill in Conference Evaluation Forms; Discuss Future Site and Scheduling Preferences; Election of the Next Vice Chair
9:00 am - 12:30 pm
Chromatin Organization During Differentiation and Development
Discussion Leader: Brian Chadwick (Florida State University, USA)
9:00 am - 9:20 am
Jiang Liu (Beijing Institute of Genomics, Chinese Academy of Sciences, China)
"The Reprogramming of 3D Chromatin Architecture During Mammalian Embryogenesis"
9:20 am - 9:30 am
Discussion
9:30 am - 9:50 am
Maria-Elena Torres-Padilla (Institute of Epigenetics and Stem Cells, Helmholtz Zentrum München, Germany)
"Epigenetic Mechanisms in Early Mammalian Development: Setting up the Nucleus"
9:50 am - 10:00 am
Discussion
10:00 am - 10:30 am
Coffee Break
10:30 am - 10:40 am
Ichiro Hiratani (RIKEN Center for Biosystems Dynamics Research (RIKEN BDR), Japan)
"Single-Cell DNA Replication Profiling Reveals the Principles of 3D Genome Organization Dynamics at the Megabase Scale"
10:40 am - 10:45 am
Discussion
10:45 am - 10:55 am
Lauren Kane (MRC Human Genetics Unit, The University of Edinburgh, United Kingdom)
"Is TAD Structure Important for Distal Regulation of the Shh Locus?"
10:55 am - 11:00 am
Discussion
11:00 am - 11:20 am
Wei Xie (Tsinghua University, China)
"Reprogramming of Chromatin Architecture in Mammalian Gametogenesis and Early Development"
11:20 am - 11:30 am
Discussion
11:30 am - 11:50 am
Suzana Hadjur (University College London, United Kingdom)
"Cohesin Complex Diversity During Development"
11:50 am - 12:00 pm
Discussion
12:00 pm - 12:20 pm
Pengtao Liu (The University of Hong Kong, Hong Kong SAR China)
"Expanded Potential Stem Cells of Mouse, Human and Pig"
12:20 pm - 12:30 pm
Discussion
12:30 pm - 1:30 pm
Lunch
1:30 pm - 4:00 pm
Free Time
4:00 pm - 6:00 pm
Imaging Chromatin Architecture
Discussion Leader: Mathew Thayer (Oregon Health & Science University, USA)
4:00 pm - 4:20 pm
Andrew Belmont (University of Illinois at Urbana-Champaign, USA)
"Bridging Microscopy and Genomics Using TSA-Seq to Study Nuclear Organization"
4:20 pm - 4:30 pm
Discussion
4:30 pm - 4:50 pm
Maria Cosma (Center for Genomic Regulation (CRG), Spain)
"Investigating the Nanoscale Structure and Looping Chromatin in Somatic and Stem Cells"
4:50 pm - 5:00 pm
Discussion
5:00 pm - 5:20 pm
Ting (C-ting) Wu (Harvard Medical School, USA)
"Looking at Chromosomes"
5:20 pm - 5:30 pm
Discussion
5:30 pm - 5:40 pm
Hanhui Ma (ShanghaiTech University, China)
"Tracking Epigenetic Modification-Mediated Genome Organization in Living Cells"
5:40 pm - 5:45 pm
Discussion
5:45 pm - 5:55 pm
Elizabeth Finn (National Cancer Institute, NIH, USA)
"Heterogeneity and Intrinsic Variation in Spatial Genome Organization"
5:55 pm - 6:00 pm
Discussion
6:00 pm - 7:00 pm
Dinner
Friday
7:30 am - 8:30 am
Breakfast
9:00 am
Departure