Sunday
2:00 pm - 9:00 pm
Arrival and Check-in
6:00 pm - 7:00 pm
Dinner
7:30 pm - 7:40 pm
Introductory Comments by GRC Site Staff / Welcome from the GRC Chair
7:40 pm - 9:30 pm
Genomes
Discussion Leader: Musa Mhlanga (Radboud Institute for Molecular Life Sciences, The Netherlands)
7:40 pm - 8:05 pm
Manuel Leonetti (Chan Zuckerberg Biohub, United States)
"OpenCell: Intracellular Cartography of the Human Proteome"
8:05 pm - 8:15 pm
Discussion
8:15 pm - 8:40 pm
Charles Gawad (Stanford University, United States)
"Transforming Our Understanding of Cancer Biology through Single-Cell Genomics"
8:40 pm - 8:50 pm
Discussion
8:50 pm - 9:15 pm
Oliver Stegle (DKFZ & EMBL Heidelberg, Germany)
"Mapping Gene Regulatory Dependencies with Single-Cell Resolution"
9:15 pm - 9:25 pm
Discussion
9:25 pm - 9:30 pm
General Discussion
Monday
7:30 am - 8:30 am
Breakfast
9:00 am - 12:30 pm
Proteins and New Technologies
Discussion Leader: Rong Fan (Yale University, United States)
9:00 am - 9:25 am
Matthias Mann (Max Planck Institute of Biochemistry, Germany)
"Ultra-High Sensitivity Mass Spectrometry Quantifies Single-Cell Proteomes"
9:25 am - 9:35 am
Discussion
9:35 am - 10:00 am
Nikolai Slavov (Northeastern University, United States)
"Exploring Functional Protein Covariation Across Single Cells Using Parallel Proteomics"
10:00 am - 10:10 am
Discussion
10:10 am - 10:25 am
Zachary Chiang (Harvard University, United States)
"In Situ Genome Sequencing and Slide-DNA-Seq Enable Spatial Multi-Omics Across Length Scales"
10:25 am - 10:30 am
Discussion
10:30 am - 10:55 am
Coffee Break
10:55 am - 11:20 am
William Greenleaf (Stanford University, United States)
"Landscapes of Single Cell Chromatin Accessibility in Health and Disease"
11:20 am - 11:30 am
Discussion
11:30 am - 11:45 am
Ashley Maynard (ETH Zurich, Switzerland)
"Single-Cell Analyses of Axolotl Forebrain Organization, Neurogenesis, and Regeneration"
11:45 am - 11:50 am
Discussion
11:50 am - 12:05 pm
Hee-Sun Han (University of Illinois at Urbana-Champaign, United States)
"New Analytical Tools to Profile Gene Networks in Brains and Cancer"
12:05 pm - 12:10 pm
Discussion
12:10 pm - 12:30 pm
General Discussion
12:30 pm - 1:30 pm
Group Photo / Lunch
1:30 pm - 4:30 pm
Free Time
4:30 pm - 6:00 pm
Poster Session
6:00 pm - 8:00 pm
New Technologies
Discussion Leaders: William Greenleaf (Stanford University, United States)
6:00 pm - 6:25 pm
Musa Mhlanga (Radboud Institute for Molecular Life Sciences, The Netherlands)
"The Single Cell Epigenomic Landscape in the Human Bone Marrow Pre & Post-Vaccination"
6:25 pm - 6:35 pm
Discussion
6:35 pm - 7:00 pm
Rong Fan (Yale University, United States)
"Spatial Epigenome Sequencing at Tissue Scale and Cellular Level"
7:00 pm - 7:10 pm
Discussion
7:10 pm - 7:35 pm
Martin Enge (Karolinska Institutet, Sweden)
"Single Cell Multiomics for Cancer Biology"
7:35 pm - 7:45 pm
Discussion
7:45 pm - 7:55 pm
Craig Lowe (Duke University, United States)
"A Multiplex Enhancer Assay in Developing Tissue at the Level of Single Cells"
7:55 pm - 8:00 pm
Discussion
8:00 pm - 9:00 pm
Dinner
Tuesday
7:30 am - 8:30 am
Breakfast
9:00 am - 12:30 pm
Transcriptomics
Discussion Leaders: Gioele La Manno (EPFL, Switzerland)
9:00 am - 9:25 am
Robert Jones (Stanford University, United States)
"Single Cell Transcriptomic Atlases"
9:25 am - 9:35 am
Discussion
9:35 am - 10:00 am
Aki Minoda (RIKEN, Japan)
"Mouse Ageing Promoter Atlas: Effect of Microbiota on Ageing"
10:00 am - 10:10 am
Discussion
10:10 am - 10:25 am
David McKellar (Cornell University, United States)
"Strengths in Numbers: Exploring Muscle Regeneration Through Single-Cell and Spatial Transcriptomics"
10:25 am - 10:30 am
Discussion
10:30 am - 11:00 am
Coffee Break
11:00 am - 11:25 am
Bart Deplancke (EPFL Lausanne, Switzerland)
"Engineering Next Generation Single Cell Phenomic Technologies"
11:25 am - 11:35 am
Discussion
11:35 am - 12:00 pm
Rickard Sandberg (Karolinska Institute, Sweden)
"Decoding Transcriptional Processes and Kinetics With Single-Cell Transcriptomics"
12:00 pm - 12:10 pm
Discussion
12:10 pm - 12:30 pm
General Discussion
12:30 pm - 1:30 pm
Lunch
1:30 pm - 4:30 pm
Free Time
4:30 pm - 6:00 pm
Poster Session
6:00 pm - 8:00 pm
Cancer
Discussion Leader: Aki Minoda (RIKEN, Japan)
6:00 pm - 6:25 pm
Alexander Meissner (Max Planck Institute for Molecular Genetics, Germany)
"Investigating Early Mammalian Development and Cancer at Single Cell Resolution"
6:25 pm - 6:35 pm
Discussion
6:35 pm - 7:00 pm
Michael Clarke (Stanford University, United States)
"Role of Stem Cells in Health and Disease"
7:00 pm - 7:10 pm
Discussion
7:10 pm - 7:20 pm
Yue Huang (Boston Children's Hospital, United States)
"Increased Burden of Somatic Mutations in Alzheimer’s Disease Revealed by Single Neuron Whole-Genome Sequencing"
7:20 pm - 7:25 pm
Discussion
7:25 pm - 7:50 pm
Andreas Moor (ETH Zurich, Switzerland)
"Probing Cellular Interactions in the Tumor Microenvironment"
7:50 pm - 8:00 pm
Discussion
8:00 pm - 9:00 pm
Dinner
Wednesday
7:30 am - 8:30 am
Breakfast
9:00 am - 12:30 pm
Imaging
Discussion Leader: Angela Oliveira Pisco (Chan Zuckerberg Biohub, United States)
9:00 am - 9:20 am
Introduction by Discussion Leader
9:20 am - 9:45 am
Prisca Liberali (Friedrich Miescher Institute for Biomedical Research, Switzerland)
"Self-Organization in Multicellular Systems"
9:45 am - 9:55 am
Discussion
9:55 am - 10:20 am
Gioele La Manno (EPFL, Switzerland)
"Combined Single-Cell Lipidomics and Transcriptomics Reveal a Sphingolipid-Mediated Control of Cell Identity"
10:20 am - 10:30 am
Discussion
10:30 am - 11:00 am
Coffee Break
11:00 am - 11:25 am
Timm Schroeder (ETH Zurich, Basel, Switzerland, Switzerland)
"Analyzing Cell Fate Control Dynamics by Long-Term Single-Cell Quantification"
11:25 am - 11:35 am
Discussion
11:35 am - 12:00 pm
Loic Royer (Chan Zuckerberg Biohub, United States)
"Novel Light-Sheet Microscopy Technologies"
12:00 pm - 12:10 pm
Discussion
12:10 pm - 12:30 pm
General Discussion
12:30 pm - 1:30 pm
Lunch
1:30 pm - 4:30 pm
Free Time
4:30 pm - 6:00 pm
Poster Session
6:00 pm - 8:00 pm
Transcriptomics
Discussion Leader: Manuel Leonetti (Chan Zuckerberg Biohub, United States)
6:00 pm - 6:25 pm
Camille Ezran (Stanford University, United States)
"Tabula Microcebus: A Transcriptomic Cell Atlas of Mouse Lemur, an Emerging Primate Model Organism"
6:25 pm - 6:40 pm
Discussion
6:40 pm - 7:05 pm
Angela Oliveira Pisco (Chan Zuckerberg Biohub, United States)
"Computational Tools for Multimodal Atlas"
7:05 pm - 7:20 pm
Discussion
7:20 pm - 7:45 pm
Sara-Jane Dunn (DeepMind, United Kingdom)
"Late-Breaking Topic"
7:45 pm - 8:00 pm
Discussion
8:00 pm - 9:00 pm
Dinner
Thursday
7:30 am - 8:30 am
Breakfast
8:30 am - 9:00 am
Business Meeting
Nominations for the Next Vice Chair; Fill in Conference Evaluation Forms; Discuss Future Site and Scheduling Preferences; Election of the Next Vice Chair
9:00 am - 12:30 pm
Applications to Neurobiology
Discussion Leader: Omer Bayraktar (Wellcome Sanger Institute, United Kingdom)
9:00 am - 9:25 am
Hongkui Zeng (Allen Institute for Brain Science, United States)
"Toward a Whole Mouse Brain Transcriptomic Cell Type Atlas"
9:25 am - 9:35 am
Discussion
9:35 am - 9:50 am
Dorottya Ralbovszki (University of Copenhagen, Denmark)
"Single Cell Mapping the Evolution of the Spatial Processing Centre in the Brain"
9:50 am - 9:55 am
Discussion
9:55 am - 10:20 am
Reuben Saunders (Whitehead Institute, United States)
"Mapping Rich Genotype-Phenotype Landscapes with Genome-Scale Perturb-Seq"
10:20 am - 10:30 am
Discussion
10:30 am - 11:05 am
Coffee Break
11:05 am - 11:30 am
Jeffrey Moffitt (Boston Children's Hospital and Harvard Medical School, United States)
"Constructing Cellular Atlases with Image-Based Spatial Transcriptomics"
11:30 am - 11:40 am
Discussion
11:40 am - 11:55 am
Anubhav Sinha (Massachusetts Institute of Technology, United States)
"Spatially precise multimodal characterization of intact biological systems"
11:55 am - 12:00 pm
Discussion
12:00 pm - 12:15 pm
Emily Marcisak (Johns Hopkins School of Medicine, United States)
"Decoding the T cell receptor: Sequence-based identification of mutant KRAS vaccine-specific T cells from unstimulated peripheral blood"
12:15 pm - 12:20 pm
Discussion
12:20 pm - 12:30 pm
General Discussion
12:30 pm - 1:30 pm
Lunch
1:30 pm - 4:30 pm
Free Time
4:30 pm - 6:00 pm
Poster Session
6:00 pm - 8:00 pm
New Technologies
Discussion Leader: Oliver Stegle (DKFZ & EMBL Heidelberg, Germany)
6:00 pm - 6:15 pm
Introduction by Discussion Leader
6:15 pm - 6:40 pm
J. Gray Camp (Roche Institute for Translational Bioengineering, Switzerland)
"Reconstructing Human Organoid Development With Single-Cell Technologies"
6:40 pm - 6:50 pm
Discussion
6:50 pm - 7:15 pm
Gioele La Manno (EPFL, Switzerland)
"Combined Single-Cell Lipidomics and Transcriptomics Reveal a Sphingolipid-Mediated Control of Cell Identity"
7:15 pm - 7:25 pm
Discussion
7:25 pm - 7:45 pm
General Discussion
7:45 pm - 8:00 pm
Closing Remarks
8:00 pm - 9:00 pm
Dinner
Friday
7:30 am - 8:30 am
Breakfast
9:00 am
Departure